miRBase entry: ami-mir-125a

Stem-loop ami-mir-125a

Accession

MI0029721

Description

Alligator mississippiensis ami-mir-125a precursor miRNA

Sequence

cuaggccucccucucggUCCCUGAGACCCUUAUCCUGUGagggagcccagagcucacaggugaggccuugggaacugggcggguggcccccccac
...((((.(((.((((((.((((((..(((((.((((((((...........))))))))))))).)))))).)))))).))).)))).......

Structure

----cua    u   u      C      AC     U        ggag 
       ggcc ccc cucggU CCUGAG  CCUUA CCUGUGag    c
       |||| ||| |||||| ||||||  ||||| ||||||||    c
       ccgg ggg ggguca ggguuc  ggagu ggacacuc    c
caccccc    u   c      a      -c     -        gaga

Annotation confidence Not enough data

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Genome context

AKHW03006683.1: 234116-234210 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ami-mir-125a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ami-miR-125a-5p

Accession	MIMAT0038127
Description	Alligator mississippiensis ami-miR-125a-5p mature miRNA
Sequence	18 - UCCCUGAGACCCUUAUCCUGUG - 39
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196