Stem-loop ami-mir-125b-1

Accession

MI0029722

Description

Alligator mississippiensis ami-mir-125b-1 precursor miRNA

Sequence

uuugugcgccccucucaaUCCCUGAGACCCUAACUUGUGAuguuuagcuuuuaaauccACGGGUUAGGCUCUUGGGAGCUgugaguugugcuuuggc
.....((((..(((.((.((((.((((.(((((((((((..(((((.....))))).))))))))))).))))))))..)).)))..))))......

Structure

-uuugu    cc   u  -a    U    C           Au     g 
      gcgc  cuc ca  UCCC GAGA CCUAACUUGUG  guuua c
      ||||  ||| ||  |||| |||| |||||||||||  ||||| u
      cgug  gag gU  AGGG UUCU GGAUUGGGCAc  uaaau u
cgguuu    uu   u  CG    -    C           -c     u 

Annotation confidence Not enough data

Genome context

AKHW03002395.1: 3961390-3961486 [+]

Mature ami-miR-125b-5p

• Accession: MIMAT0038128
• Description: Alligator mississippiensis ami-miR-125b-5p mature miRNA
• Sequence: 19 - UCCCUGAGACCCUAACUUGUGA - 40
• Evidence: experimental ; Illumina [1]

Mature ami-miR-125b-3p

• Accession: MIMAT0038129
• Description: Alligator mississippiensis ami-miR-125b-3p mature miRNA
• Sequence: 59 - ACGGGUUAGGCUCUUGGGAGCU - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24798503
   Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
   "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
   "Evol Dev (2014) 16:189-196