miRBase entry: cli-mir-99

Stem-loop cli-mir-99

Accession

MI0029945

Description

Columba livia cli-mir-99 precursor miRNA

Sequence

gaugccaauuggcauaAACCCGUAGAUCCGAUCUUGUGuugaaacgcacugcaCAAGCUCGCUUCUAUGGGUCUGugucaguauggugauc
((((((((((((((((.(((((((((..(((.(((((((...........))))))).)))..))))))))).))))))))).)))).)))

Structure

   -    -         A         UC   U       ugaa 
gau gcca auuggcaua ACCCGUAGA  CGA CUUGUGu    a
||| |||| ||||||||| |||||||||  ||| |||||||    c
cua uggu ugacuguGU UGGGUAUCU  GCU GAACacg    g
   g    a         C         UC   C       ucac

Annotation confidence Not enough data

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Genome context

KB375804.1: 18429898-18429988 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-99

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-99-5p

Accession	MIMAT0038478
Description	Columba livia cli-miR-99-5p mature miRNA
Sequence	17 - AACCCGUAGAUCCGAUCUUGUG - 38
Evidence	experimental Illumina [1]

Mature cli-miR-99-3p

Accession	MIMAT0038479
Description	Columba livia cli-miR-99-3p mature miRNA
Sequence	54 - CAAGCUCGCUUCUAUGGGUCUG - 75
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196