miRBase entry: cli-mir-100-1

Stem-loop cli-mir-100-1

Accession

MI0029946

Description

Columba livia cli-mir-100-1 precursor miRNA

Sequence

gcgccuguugccacaAACCCGUAGAUCCGAACUUGUGgucauauuccacaCAAGCUUGUAUCUAUAGGUAUGugucugucuggcaagugc
((((.((((((((((.(((.((((((.(((.((((((...........)))))).))).)))))).))).))))...))..)))).))))

Structure

    c    --  ---    A   C      C   A      guca 
gcgc uguu  gc   caca ACC GUAGAU CGA CUUGUG    u
|||| ||||  ||   |||| ||| |||||| ||| ||||||    a
cgug acgg  ug   guGU UGG UAUCUA GUU GAACac    u
    a    uc  ucu    A   A      U   C      accu

Annotation confidence Not enough data

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Genome context

KB375651.1: 869665-869754 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-100-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-100-5p

Accession	MIMAT0038480
Description	Columba livia cli-miR-100-5p mature miRNA
Sequence	16 - AACCCGUAGAUCCGAACUUGUG - 37
Evidence	experimental Illumina [1]

Mature cli-miR-100-3p

Accession	MIMAT0038481
Description	Columba livia cli-miR-100-3p mature miRNA
Sequence	51 - CAAGCUUGUAUCUAUAGGUAUG - 72
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196