miRBase entry: cli-mir-9618

Stem-loop cli-mir-9618

Accession

MI0030095

Description

Columba livia cli-mir-9618 precursor miRNA

Sequence

ucaagcugugggguccUGGCAGAGGGCCCACUCUUGGCcggggggacaaagcCAUCAAAGAUGGACCCUCUGCUGGcaccccacagcugca
...(((((((((((.(((((((((((.(((.(((((((...(....)...))))....)))))).))))))))))).)))))))))))...

Structure

uca           c           C   C   ----    cgg g 
   agcuguggggu cUGGCAGAGGG CCA UCU    UGGC   g g
   ||||||||||| ||||||||||| ||| |||    ||||   |  
   ucgacacccca GGUCGUCUCCC GGU AGA    ACcg   c g
acg           c           A   -   AACU    aaa a

Annotation confidence Not enough data

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Genome context

KB375305.1: 1390768-1390858 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from cli-mir-9618

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cli-miR-9618-5p

Accession	MIMAT0038725
Description	Columba livia cli-miR-9618-5p mature miRNA
Sequence	17 - UGGCAGAGGGCCCACUCUUGGC - 38
Evidence	experimental Illumina [1]

Mature cli-miR-9618-3p

Accession	MIMAT0038726
Description	Columba livia cli-miR-9618-3p mature miRNA
Sequence	53 - CAUCAAAGAUGGACCCUCUGCUGG - 76
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196