miRBase entry: cli-mir-9647

Stem-loop cli-mir-9647


Accession
MI0030127
Description
Columba livia cli-mir-9647 precursor miRNA


Sequence

710 reads, 6.0 reads per million, 21 experiments
agGUGAGGGCUGGUUCCCGCGCUGGUGuguggcuccguggccccgagcugcccgggAGCCGCUCACCAGCGCUGGUGUcucuguccccaggu
.((.((.((..((..((.(((((((((.((((((((..(((........)))..)))))))).))))))))).))..)).)).)).))....

Structure
---a  U  G  CU  UU  C         u        gu   ccc 
    gG GA GG  GG  CC GCGCUGGUG guggcucc  ggc   g
    || || ||  ||  || ||||||||| ||||||||  |||    
    cc cu uc  cU  GG CGCGACCAC CGCCGAgg  ccg   a
ugga  c  g  -u  GU  U         U        gc   ucg 


Annotation confidence Medium
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Genome context
17: 1021040-1021131 [-]

Database links

Mature cli-miR-9647-5p

Accession MIMAT0038787
Description Columba livia cli-miR-9647-5p mature miRNA
Sequence 3 - GUGAGGGCUGGUUCCCGCGCUGGUG - 27
Evidence experimental
Illumina [1]

Mature cli-miR-9647-3p

Accession MIMAT0038788
Description Columba livia cli-miR-9647-3p mature miRNA
Sequence 57 - AGCCGCUCACCAGCGCUGGUGU - 78
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24798503
    Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
    "Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
    "Evol Dev (2014) 16:189-196