miRBase entry: pbv-mir-18b

Stem-loop pbv-mir-18b

Accession

MI0030163

Description

Python bivittatus pbv-mir-18b precursor miRNA

Sequence

aguuucuugugcUAAGGUGCAUCUAGUGCAGUUagugaacuagcuuagacucuacugcccugagugcuccuucuggca
.........((((((((.((((.(((.(((((.(((............)))..))))).))).)))).)))..)))))

Structure

aguuucuug     --   U    C   U     -U   gaacu 
         ugcUA  AGG GCAU UAG GCAGU  agu     a
         |||||  ||| |||| ||| |||||  |||      
         acggu  ucc cgug guc cguca  uca     g
---------     cu   u    a   c     uc   gauuc

Annotation confidence Not enough data

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Genome context

KE958055.1: 3574-3651 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from pbv-mir-18b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-18b-5p

Accession	MIMAT0038842
Description	Python bivittatus pbv-miR-18b-5p mature miRNA
Sequence	13 - UAAGGUGCAUCUAGUGCAGUU - 33
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196