miRBase entry: pbv-mir-99a

Stem-loop pbv-mir-99a

Accession

MI0030201

Description

Python bivittatus pbv-mir-99a precursor miRNA

Sequence

gugccaauuggcauaAACCCGUAGAUCCGAUCUUGUGGugaaauauagugcaCAAGCUCGUUUCUAUGGGUCAGugucagucuggug
..((((((((((((..(((((((((..(((.((((((.............)))))).)))..)))))))))..)))))))).)))).

Structure

gu    -        aA         UC   U      Gugaa 
  gcca auuggcau  ACCCGUAGA  CGA CUUGUG     a
  |||| ||||||||  |||||||||  ||| ||||||     u
  uggu ugacuguG  UGGGUAUCU  GCU GAACac     a
-g    c        AC         UU   C      gugau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

KE953041.1: 91437-91523 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pbv-mir-99a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-99a-5p

Accession	MIMAT0038895
Description	Python bivittatus pbv-miR-99a-5p mature miRNA
Sequence	16 - AACCCGUAGAUCCGAUCUUGUGG - 38
Evidence	experimental Illumina [1]

Mature pbv-miR-99a-3p

Accession	MIMAT0038896
Description	Python bivittatus pbv-miR-99a-3p mature miRNA
Sequence	53 - CAAGCUCGUUUCUAUGGGUCAG - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196