miRBase entry: pbv-mir-99b

Stem-loop pbv-mir-99b

Accession

MI0030202

Description

Python bivittatus pbv-mir-99b precursor miRNA

Sequence

ggcuuugccgguugccauaAACCCGUAGAUCCGAACUUGCGguacgacugccucacaCAAGCUCGAGUCUGUGGGUAUGugucgaccuuggc
(((...)))(((((.((((.((((((((((.(((.((((.((((....)))).....)))).))).)))))))))).)))).))))).....

Structure

ggcuuugcc     c    A          C   A    ----C    c 
         gguug caua ACCCGUAGAU CGA CUUG     Ggua g
         ||||| |||| |||||||||| ||| ||||     ||||  
         ccagc guGU UGGGUGUCUG GCU GAAC     ccgu a
----cgguu     u    A          A   C    acacu    c

Annotation confidence Not enough data

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Genome context

KE959282.1: 28262-28353 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pbv-mir-99b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pbv-miR-99b-5p

Accession	MIMAT0038897
Description	Python bivittatus pbv-miR-99b-5p mature miRNA
Sequence	20 - AACCCGUAGAUCCGAACUUGCG - 41
Evidence	experimental Illumina [1]

Mature pbv-miR-99b-3p

Accession	MIMAT0038898
Description	Python bivittatus pbv-miR-99b-3p mature miRNA
Sequence	58 - CAAGCUCGAGUCUGUGGGUAUG - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 24798503
Toward consilience in reptile phylogeny: miRNAs support an archosaur, not lepidosaur, affinity for turtles
"Field DJ, Gauthier JA, King BL, Pisani D, Lyson TR, Peterson KJ"
"Evol Dev (2014) 16:189-196