miRBase entry: bra-MIR156b

Stem-loop bra-MIR156b


Accession
MI0030548
Description
Brassica rapa bra-MIR156b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
16 open access papers mention bra-MIR156b
(150 sentences)

Sequence

gagugcugaggaauugauggUGACAGAAGAGAGUGAGCACacaugguggcuuucuugcauauuugaagaugucaugcuugaagcuauguguGCUCACUCUCUAUCUGUCACCgccuucucuc
.......(((((...(.((((((((((((((((((((((((((((((....(((..((((((........)).))))..))))))))))))))))))))))).))))))))))).)))))..

Structure
gagugcu     auu a          -                    ggcu   uu    -  uug 
       gagga   g uggUGACAGA AGAGAGUGAGCACacauggu    uuc  gcau au   a
       |||||   | |||||||||| ||||||||||||||||||||    |||  |||| ||    
       cucuu   c gCCACUGUCU UCUCUCACUCGuguguaucg    aag  cgua ug   a
-----cu     --c -          A                    ----   uu    c  uag 


Annotation confidence Not enough data
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Genome context
chrA6: 17880337-17880458 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from bra-MIR156b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature bra-miR156b-5p

Accession MIMAT0035818
Description Brassica rapa bra-miR156b-5p mature miRNA
Sequence 21 - UGACAGAAGAGAGUGAGCAC - 40
Evidence experimental
Illumina [1]

Mature bra-miR156b-3p

Accession MIMAT0035819
Description Brassica rapa bra-miR156b-3p mature miRNA
Sequence 92 - GCUCACUCUCUAUCUGUCACC - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 24559317
    Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
    Jiang J, Lv M, Liang Y, Ma Z, Cao J
    BMC Genomics (2014) 15:146