Stem-loop bra-MIR162

Accession

MI0030554

Description

Brassica rapa bra-MIR162 precursor miRNA

Literature search

6 open access papers mention bra-MIR162
(6 sentences)

Sequence

ugaaaguugaagucgcuGGAGGCAGCGGUUCAUCGAUCaauuccugugaaaaaugauguuggaaacaauuuacaugggaagcaugaaucgaUCGAUAAACCUCUGCAUCCAGugcuucuccuuccu
...(((..((((.(((((((.((((.((((.(((((((.((((.(((.....((((.((((....)))).).))).....))).)))).))))))).)))).)))).)))))))))))..)))...

Structure

uga   uu    u       G    C    C       a    c   gaaaa   - u    g 
   aag  gaag cgcuGGA GCAG GGUU AUCGAUC auuc ugu     aug a guug a
   |||  |||| ||||||| |||| |||| ||||||| |||| |||     ||| | ||||  
   uuc  cuuc guGACCU CGUC CCAA UAGCUag uaag acg     uac u uaac a
ucc   cu    -       A    U    A       c    u   aaggg   a u    a 

Annotation confidence Not enough data

Genome context

chrA3: 21022093-21022218 [+]

Mature bra-miR162-5p

• Accession: MIMAT0035830
• Description: Brassica rapa bra-miR162-5p mature miRNA
• Sequence: 18 - GGAGGCAGCGGUUCAUCGAUC - 38
• Evidence: experimental ; Illumina [1]

Mature bra-miR162-3p

• Accession: MIMAT0035831
• Description: Brassica rapa bra-miR162-3p mature miRNA
• Sequence: 92 - UCGAUAAACCUCUGCAUCCAG - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146