Stem-loop bra-MIR400

Accession

MI0030567

Description

Brassica rapa bra-MIR400 precursor miRNA

Literature search

3 open access papers mention bra-MIR400
(6 sentences)

Sequence

aucuuuucuugagaaguugcugaagauuguuuUAUGAGAGUAUUAUAAGUCACugcauuugguaaucaaguguugcuuucccaaacgaaguGACUUAUAAUGAUCUCAUGAAucgauuuuugcaaagucuuaagagaguaa
...(((((((((((..((((.((((((((.(((((((((.((((((((((((((.(.(((((.....((((...))))..))))).).)))))))))))))).))))))))).))))))))))))..)))))))))))...

Structure

auc           ag    u        u         G              g a     uaauc    g 
   uuuucuugaga  uugc gaagauug uuUAUGAGA UAUUAUAAGUCACu c uuugg     aagu  
   |||||||||||  |||| |||||||| ||||||||| |||||||||||||| | |||||     |||| u
   gagagaauucu  aacg uuuuuagc AAGUACUCU GUAAUAUUCAGuga g aaacc     uucg  
aau           ga    -        u         A              a c     ---cu    u 

Annotation confidence Not enough data

Genome context

chrA9: 20034113-20034253 [-]

Mature bra-miR400-5p

• Accession: MIMAT0035856
• Description: Brassica rapa bra-miR400-5p mature miRNA
• Sequence: 33 - UAUGAGAGUAUUAUAAGUCAC - 53
• Evidence: experimental ; Illumina [1]

Mature bra-miR400-3p

• Accession: MIMAT0035857
• Description: Brassica rapa bra-miR400-3p mature miRNA
• Sequence: 92 - GACUUAUAAUGAUCUCAUGAA - 112
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24559317
   Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis
   Jiang J, Lv M, Liang Y, Ma Z, Cao J
   BMC Genomics (2014) 15:146