Stem-loop chi-mir-106a

Accession

MI0030593

Description

Capra hircus chi-mir-106a precursor miRNA

Sequence

ccuuggccauguAAAAGUGCUUACAGUGCAGGUAGCuuuuugagaucUACUGCAAUGCAAGCACUUCUUacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure

  u   cc      -        A  G     G   C   u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacaUU UUCACGAA GU ACGUC AUc aga  
  u   au      C        C  A     -   u   g 

Annotation confidence Low

Genome context

chrX: 40075491-40075571 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-106a

Mature chi-miR-106a-5p

• Accession: MIMAT0035906
• Description: Capra hircus chi-miR-106a-5p mature miRNA
• Sequence: 13 - AAAAGUGCUUACAGUGCAGGUAGC - 36
• Evidence: experimental ; Illumina [1]

Mature chi-miR-106a-3p

• Accession: MIMAT0035907
• Description: Capra hircus chi-miR-106a-3p mature miRNA
• Sequence: 48 - UACUGCAAUGCAAGCACUUCUU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40