miRBase entry: chi-mir-106a

Stem-loop chi-mir-106a

Accession

MI0030593

Description

Capra hircus chi-mir-106a precursor miRNA

Sequence

ccuuggccauguAAAAGUGCUUACAGUGCAGGUAGCuuuuugagaucUACUGCAAUGCAAGCACUUCUUacauuaccaugg
((.(((..((((((((((((((.((.(((((.(((.(((...))).)))))))).)).)))))))).))))))..))).))

Structure

  u   cc      -        A  G     G   C   u 
cc ugg  auguAA AAGUGCUU CA UGCAG UAG uuu  
|| |||  |||||| |||||||| || ||||| ||| ||| u
gg acc  uacaUU UUCACGAA GU ACGUC AUc aga  
  u   au      C        C  A     -   u   g

Annotation confidence Not enough data

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Genome context

chrX: 40075491-40075571 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-106a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-106a-5p

Accession	MIMAT0035906
Description	Capra hircus chi-miR-106a-5p mature miRNA
Sequence	13 - AAAAGUGCUUACAGUGCAGGUAGC - 36
Evidence	experimental Illumina [1]

Mature chi-miR-106a-3p

Accession	MIMAT0035907
Description	Capra hircus chi-miR-106a-3p mature miRNA
Sequence	48 - UACUGCAAUGCAAGCACUUCUU - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40