miRBase entry: chi-mir-106b

Stem-loop chi-mir-106b

Accession

MI0030594

Description

Capra hircus chi-mir-106b precursor miRNA

Sequence

ccugccggggcUAAAGUGCUGACAGUGCAGAUagugguccugugugcuaCCGCACUGUGGGUACUUGCUgcuccagcagg
(((((.(((((..(((((((.(((((((.(.(((((........)))))).))))))).)))))))...))))).)))))

Structure

     c     -UA       G       A A     guc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagug   c
||||| |||||   ||||||| ||||||| | |||||    
ggacg ccucg   UUCAUGG UGUCACG C aucgu   u
     a     UCG       G       C -     gug

Annotation confidence Not enough data

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Genome context

chr25: 38750004-38750083 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-106b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-106b-5p

Accession	MIMAT0035908
Description	Capra hircus chi-miR-106b-5p mature miRNA
Sequence	12 - UAAAGUGCUGACAGUGCAGAU - 32
Evidence	experimental Illumina [1]

Mature chi-miR-106b-3p

Accession	MIMAT0035909
Description	Capra hircus chi-miR-106b-3p mature miRNA
Sequence	50 - CCGCACUGUGGGUACUUGCU - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40