Stem-loop chi-mir-106b

Accession

MI0030594

Description

Capra hircus chi-mir-106b precursor miRNA

Literature search

37 open access papers mention chi-mir-106b
(94 sentences)

Sequence

71594 reads, 219.0 reads per million, 36 experiments

ccugccggggcUAAAGUGCUGACAGUGCAGAUagugguccugugugcuaCCGCACUGUGGGUACUUGCUgcuccagcagg
(((((.(((((..(((((((.(((((((.(.(((((........)))))).))))))).)))))))...))))).)))))

Structure

     c     -UA       G       A A     guc 
ccugc ggggc   AAGUGCU ACAGUGC G Uagug   c
||||| |||||   ||||||| ||||||| | |||||    
ggacg ccucg   UUCAUGG UGUCACG C aucgu   u
     a     UCG       G       C -     gug 

Annotation confidence High

Genome context

chr25: 38750004-38750083 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-106b

Mature chi-miR-106b-5p

• Accession: MIMAT0035908
• Description: Capra hircus chi-miR-106b-5p mature miRNA
• Sequence: 12 - UAAAGUGCUGACAGUGCAGAU - 32
• Evidence: experimental ; Illumina [1]

Mature chi-miR-106b-3p

• Accession: MIMAT0035909
• Description: Capra hircus chi-miR-106b-3p mature miRNA
• Sequence: 50 - CCGCACUGUGGGUACUUGCU - 69
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40