Stem-loop chi-mir-1271

Accession

MI0030609

Description

Capra hircus chi-mir-1271 precursor miRNA

Sequence

cagcacccagaucagugCUUGGCACCUAGUAAGUACUcaguauauacuuguugAGUGCCUGCUAUGUGCCAGGcauugugcugagggcuuuggggggauccagag
..((.(((((..(((((((((((((.(((((.((((((((((......)))))))))).))))).)))))))))))))..))).))))((((((....)))))).

Structure

---------------ca  a  -   au             C     A          ua 
                 gc cc cag  cagugCUUGGCAC UAGUA GUACUcagua  u
                 || || |||  ||||||||||||| ||||| ||||||||||   
                 cg gg guc  guuacGGACCGUG AUCGU CGUGAguugu  a
gagaccuagggggguuu  -  a   gu             U     C          uc 

Annotation confidence Low

Genome context

chr7: 36811795-36811899 [+]

Mature chi-miR-1271-5p

• Accession: MIMAT0035931
• Description: Capra hircus chi-miR-1271-5p mature miRNA
• Sequence: 18 - CUUGGCACCUAGUAAGUACU - 37
• Evidence: experimental ; Illumina [1]

Mature chi-miR-1271-3p

• Accession: MIMAT0035932
• Description: Capra hircus chi-miR-1271-3p mature miRNA
• Sequence: 54 - AGUGCCUGCUAUGUGCCAGG - 73
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40