Stem-loop chi-mir-136

Accession

MI0030624

Description

Capra hircus chi-mir-136 precursor miRNA

Literature search

2 open access papers mention chi-mir-136
(4 sentences)

Sequence

ucggaugagcccucggaggACUCCAUUUGUUUUGAUGAUGGauucuuacgcuccAUCAUCGUCUCAAAUGAGUCUucagaggguucuaucau
...(((((((((((.((((((((.(((((...((((((((((.........))))))))))...))))))))))))).)))))))).)))..

Structure

ucg   -        g        C     UUU          uuc 
   gau gagcccuc gaggACUC AUUUG   UGAUGAUGGa   u
   ||| |||||||| |||||||| |||||   ||||||||||   u
   cua cuugggag cuUCUGAG UAAAC   GCUACUAccu   a
-ua   u        a        -     UCU          cgc 

Annotation confidence Not enough data

Genome context

chr21: 66967078-66967169 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from chi-mir-136

Mature chi-miR-136-5p

• Accession: MIMAT0035955
• Description: Capra hircus chi-miR-136-5p mature miRNA
• Sequence: 20 - ACUCCAUUUGUUUUGAUGAUGG - 41
• Evidence: experimental ; Illumina [1]

Mature chi-miR-136-3p

• Accession: MIMAT0035956
• Description: Capra hircus chi-miR-136-3p mature miRNA
• Sequence: 55 - AUCAUCGUCUCAAAUGAGUCU - 75
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40