Stem-loop chi-mir-141

Accession

MI0030628

Description

Capra hircus chi-mir-141 precursor miRNA

Literature search

59 open access papers mention chi-mir-141
(334 sentences)

Sequence

436591 reads, 1325.0 reads per million, 36 experiments

gaccggcucugggucCAUCUUCCAGCACAGUGUUGGAUGGucuaauggugaagcuccUAACACUGUCUGGUAAAGAUGGcccccggcugg
..((((((..(((.(((((((((((.(((((((((((...((.......))...))).))))))))))))..))))))))))..))))))

Structure

ga      cu   u       --    C        -   UGG  ua 
  ccggcu  ggg cCAUCUU  CCAG ACAGUGUU GGA   uc  a
  ||||||  ||| |||||||  |||| |||||||| |||   ||  u
  ggucgg  ccc GGUAGAA  GGUC UGUCACAA ccu   ag  g
--      cc   -       AU    -        U   cga  ug 

Annotation confidence High

Genome context

chr5: 104155114-104155203 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-141

Mature chi-miR-141-5p

• Accession: MIMAT0058941
• Description: Capra hircus chi-miR-141-5p mature miRNA
• Sequence: 16 - CAUCUUCCAGCACAGUGUUGGAUGG - 40
• Evidence: experimental ; Illumina [1]

Mature chi-miR-141-3p

• Accession: MIMAT0035962
• Description: Capra hircus chi-miR-141-3p mature miRNA
• Sequence: 58 - UAACACUGUCUGGUAAAGAUGG - 79
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40