Stem-loop chi-mir-145

Accession

MI0030631

Description

Capra hircus chi-mir-145 precursor miRNA

Literature search

8 open access papers mention chi-mir-145
(26 sentences)

Sequence

caccuuguccucacgGUCCAGUUUUCCCAGGAAUCCCUuagaugcuaagauggggAUUCCUGGAAAUACUGUUCUUgaggucaugguu
.(((.((.(((((.((..((((.((.((((((((((((.............)))))))))))).)).))))..))))))).)).))).

Structure

c   u  u     c  UC    U  C            uagau 
 acc ug ccuca gG  CAGU UU CCAGGAAUCCCU     g
 ||| || ||||| ||  |||| || ||||||||||||     c
 ugg ac ggagU UC  GUCA AA GGUCCUUAgggg     u
u   u  u     -  UU    U  A            uagaa 

Annotation confidence Not enough data

Genome context

chr7: 60509933-60510020 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-145

Mature chi-miR-145-5p

• Accession: MIMAT0035967
• Description: Capra hircus chi-miR-145-5p mature miRNA
• Sequence: 16 - GUCCAGUUUUCCCAGGAAUCCCU - 38
• Evidence: experimental ; Illumina [1]

Mature chi-miR-145-3p

• Accession: MIMAT0035968
• Description: Capra hircus chi-miR-145-3p mature miRNA
• Sequence: 56 - AUUCCUGGAAAUACUGUUCUU - 76
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40