Stem-loop chi-mir-16b

Accession

MI0030647

Description

Capra hircus chi-mir-16b precursor miRNA

Literature search

7 open access papers mention chi-mir-16b
(14 sentences)

Sequence

cugacauacuuguuccgcucUAGCAGCACGUAAAUAUUGGGGuaguaaaauaaauauuaaacACCAAUAUUAUUGUGCUGCUUUagcgugacaggga
........((((((.((((..(((((((((..((((((((..(((((.......)))))....))))))))..)))))))))..)))).))))))..

Structure

cugacaua      c    cU         UA        --GG     aa 
        cuuguu cgcu  AGCAGCACG  AAUAUUGG    uagua  a
        |||||| ||||  |||||||||  ||||||||    |||||  u
        ggacag gcga  UCGUCGUGU  UUAUAACC    auuau  a
------ag      u    UU         UA        Acaa     aa 

Annotation confidence Not enough data

Genome context

chr1: 109436307-109436403 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-16b

Mature chi-miR-16b-5p

• Accession: MIMAT0035996
• Description: Capra hircus chi-miR-16b-5p mature miRNA
• Sequence: 21 - UAGCAGCACGUAAAUAUUGGGG - 42
• Evidence: experimental ; Illumina [1]

Mature chi-miR-16b-3p

• Accession: MIMAT0035997
• Description: Capra hircus chi-miR-16b-3p mature miRNA
• Sequence: 63 - ACCAAUAUUAUUGUGCUGCUUU - 84
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40