Stem-loop chi-mir-17

Accession

MI0030648

Description

Capra hircus chi-mir-17 precursor miRNA

Literature search

6 open access papers mention chi-mir-17
(6 sentences)

Sequence

gucagaauaauguCAAAGUGCUUACAGUGCAGGUAGUgauuugugcaucuACUGCAGUGAAGGCACUUGUAGCAuuauggugac
((((..(((((((..((((((((.((.(((((.(((((.......)).)))))))).)).))))))))...)))))))..))))

Structure

    ga       -CA        A  G     G   -  au 
guca  auaaugu   AAGUGCUU CA UGCAG UAG Ug  u
||||  |||||||   |||||||| || ||||| ||| ||  u
cagu  uauuACG   UUCACGGA GU ACGUC Auc ac  g
    gg       AUG        A  G     -   u  gu 

Annotation confidence Low

Genome context

chr12: 66729474-66729557 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from chi-mir-17

Mature chi-miR-17-5p

• Accession: MIMAT0035998
• Description: Capra hircus chi-miR-17-5p mature miRNA
• Sequence: 14 - CAAAGUGCUUACAGUGCAGGUAGU - 37
• Evidence: experimental ; Illumina [1]

Mature chi-miR-17-3p

• Accession: MIMAT0035999
• Description: Capra hircus chi-miR-17-3p mature miRNA
• Sequence: 51 - ACUGCAGUGAAGGCACUUGUAGCA - 74
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40