Stem-loop chi-mir-18b

Accession

MI0030661

Description

Capra hircus chi-mir-18b precursor miRNA

Literature search

8 open access papers mention chi-mir-18b
(25 sentences)

Sequence

1707 reads, 5.0 reads per million, 36 experiments

auaaugugucucuuguguUAAGGUGCAUCUAGUGCAGUUagugaagcagcuuauaaucUACUGCCCUAAAUGCUCCUUCUGgcacaggcugccu
.......((..((((((((((((.((((.(((.(((((.((................))))))).))).)))).)))..)))))))))..))..

Structure

auaaugu  cu         --   U    C   U     U  ugaagca 
       gu  cuuguguUA  AGG GCAU UAG GCAGU ag       g
       ||  |||||||||  ||| |||| ||| ||||| ||        
       cg  ggacacgGU  UCC CGUA AUC CGUCA Uc       c
-----uc  uc         CU   U    A   C     -  uaauauu 

Annotation confidence High

Genome context

chrX: 40075324-40075417 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from chi-mir-18b

Mature chi-miR-18b-5p

• Accession: MIMAT0036017
• Description: Capra hircus chi-miR-18b-5p mature miRNA
• Sequence: 19 - UAAGGUGCAUCUAGUGCAGUU - 39
• Evidence: experimental ; Illumina [1]

Mature chi-miR-18b-3p

• Accession: MIMAT0036018
• Description: Capra hircus chi-miR-18b-3p mature miRNA
• Sequence: 59 - UACUGCCCUAAAUGCUCCUUCUG - 81
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40