miRBase entry: chi-mir-215

Stem-loop chi-mir-215

Accession

MI0030690

Description

Capra hircus chi-mir-215 precursor miRNA

Literature search

2 open access papers mention chi-mir-215
(2 sentences)

Sequence

auucagaaaugguguacaggaaaAUGACCUAUGAAUUGACAGACaaugggacuaagucugucugucauuucuguaggccaauauucuguauaucucugcgacuucaa
...((((...(((((((((((...((.((((((((.(((((((((....(((...)))))))))))).))).))))).))...))))))))))))))).........

Structure

------auu    aau           aaA  A     -   U         augg   u 
         caga   gguguacagga   UG CCUAU GAA UGACAGACa    gac  
         ||||   |||||||||||   || ||||| ||| |||||||||    ||| a
         gucu   cuauaugucuu   ac ggaug cuu acugucugu    cug  
aacuucagc    ---           aua  c     u   u         ----   a

Annotation confidence Not enough data

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Genome context

chr16: 23073850-23073956 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-215

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-215-5p

Accession	MIMAT0036060
Description	Capra hircus chi-miR-215-5p mature miRNA
Sequence	24 - AUGACCUAUGAAUUGACAGAC - 44
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40