Stem-loop chi-mir-215

Accession

MI0030690

Description

Capra hircus chi-mir-215 precursor miRNA

Literature search

2 open access papers mention chi-mir-215
(2 sentences)

Sequence

auucagaaaugguguacaggaaaAUGACCUAUGAAUUGACAGACaaugggacuaagucugucugucauuucuguaggccaauauucuguauaucucugcgacuucaa
...((((...(((((((((((...((.((((((((.(((((((((....(((...)))))))))))).))).))))).))...))))))))))))))).........

Structure

------auu    aau           aaA  A     -   U         augg   u 
         caga   gguguacagga   UG CCUAU GAA UGACAGACa    gac  
         ||||   |||||||||||   || ||||| ||| |||||||||    ||| a
         gucu   cuauaugucuu   ac ggaug cuu acugucugu    cug  
aacuucagc    ---           aua  c     u   u         ----   a 

Annotation confidence Low

Genome context

chr16: 23073850-23073956 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-215

Mature chi-miR-215-5p

• Accession: MIMAT0036060
• Description: Capra hircus chi-miR-215-5p mature miRNA
• Sequence: 24 - AUGACCUAUGAAUUGACAGAC - 44
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40