Stem-loop chi-mir-25

Accession

MI0030719

Description

Capra hircus chi-mir-25 precursor miRNA

Literature search

1 open access papers mention chi-mir-25
(1 sentences)

Sequence

cgggacuggccaguguugagAGGCGGAGACUUGGGCAAUUGCUggacgcugccccgggCAUUGCACUUGUCUCGGUCUGAcagugccggccccacacug
.(((.(((((.(.((((...((((.(((((..(.(((((..((((........))))..))))).)..))))).)))))))).)))))).)))......

Structure

-----c   a     c g    gag    G     UU G     UG    acg 
      ggg cuggc a uguu   AGGC GAGAC  G GCAAU  CUgg   c
      ||| ||||| | ||||   |||| |||||  | |||||  ||||    
      ccc ggccg u acAG   UCUG CUCUG  C CGUUA  ggcc   u
gucaca   c     - g    ---    G     UU A     Cg    ccg 

Annotation confidence Low

Genome context

chr25: 38750401-38750499 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-25

Mature chi-miR-25-5p

• Accession: MIMAT0036099
• Description: Capra hircus chi-miR-25-5p mature miRNA
• Sequence: 21 - AGGCGGAGACUUGGGCAAUUGCU - 43
• Evidence: experimental ; Illumina [1]

Mature chi-miR-25-3p

• Accession: MIMAT0036100
• Description: Capra hircus chi-miR-25-3p mature miRNA
• Sequence: 59 - CAUUGCACUUGUCUCGGUCUGA - 80
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40