Stem-loop chi-mir-30c

Accession

MI0030733

Description

Capra hircus chi-mir-30c precursor miRNA

Literature search

5 open access papers mention chi-mir-30c
(10 sentences)

Sequence

cagacuguaaccaugccguagugugUGUAAACAUCCUACACUCUCAGCugugagcucgagguggCUGGGAGAGGGUUGUUUACUCcuucugccauggaaaacguc
..(((.((..(((((..((((...(.(((((((.(((...(((((((((....(((...)))))))))))).))).))))))).)...)))))))))...)))))

Structure

ca   u  -aa     cc    ugu U       U   ACA         guga   c 
  gac gu   ccaug  guag   g GUAAACA CCU   CUCUCAGCu    gcu  
  ||| ||   |||||  ||||   | ||||||| |||   |||||||||    ||| g
  cug ca   gguac  cguc   C CAUUUGU GGG   GAGGGUCgg    ugg  
--   -  aaa     --    uuc U       U   --A         ----   a 

Annotation confidence Low

Genome context

chr3: 107744025-107744129 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-30c

Mature chi-miR-30c-5p

• Accession: MIMAT0036125
• Description: Capra hircus chi-miR-30c-5p mature miRNA
• Sequence: 26 - UGUAAACAUCCUACACUCUCAGC - 48
• Evidence: experimental ; Illumina [1]

Mature chi-miR-30c-3p

• Accession: MIMAT0036126
• Description: Capra hircus chi-miR-30c-3p mature miRNA
• Sequence: 65 - CUGGGAGAGGGUUGUUUACUC - 85
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40