Stem-loop chi-mir-410

Accession

MI0030783

Description

Capra hircus chi-mir-410 precursor miRNA

Literature search

14 open access papers mention chi-mir-410
(184 sentences)

Sequence

25366 reads, 81.0 reads per million, 36 experiments

caccugcggucuguggaguaggcgccacuuuggguacuugaggagAGGUUGUCUGUGAUGAGUUCGcuuuauuaaugacgAAUAUAACACAGAUGGCCUGUUuucaguaccacccaccccucgug
.....((((...((((.((.............((((((.(((((.((((((((((((.((.((((((.........).))))).)).)))))))))))).)))))))))))))))))...)))).

Structure

caccu    ucu    a  aggcgccacuuug      u     g            A  A     - uuu 
     gcgg   gugg gu             gguacu gagga AGGUUGUCUGUG UG GUUCG c   a
     ||||   |||| ||             |||||| ||||| |||||||||||| || ||||| |   u
     ugcu   cacc ca             ccauga cuuUU UCCGGUAGACAC AU UAAgc g   u
----g    ccc    -  -------------      -     G            A  A     a uaa 

Annotation confidence Medium

Genome context

chr21: 67143473-67143597 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from chi-mir-410

Mature chi-miR-410-5p

• Accession: MIMAT0036211
• Description: Capra hircus chi-miR-410-5p mature miRNA
• Sequence: 46 - AGGUUGUCUGUGAUGAGUUCG - 66
• Evidence: experimental ; Illumina [1]

Mature chi-miR-410-3p

• Accession: MIMAT0036212
• Description: Capra hircus chi-miR-410-3p mature miRNA
• Sequence: 81 - AAUAUAACACAGAUGGCCUGUU - 102
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40