miRBase entry: chi-mir-421

Stem-loop chi-mir-421

Accession

MI0030787

Description

Capra hircus chi-mir-421 precursor miRNA

Sequence

guauucgcagugccuaauucggugcacauuguaggccucauuaaauguuuguugaaugaaaaaaugaaucAUCAACAGACAUUAAUUGGGCGCcugcucugugaucuccaug
....((((((((((......))))).....((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..)))))........

Structure

----guau     gugccuaauucggugcacauu      -    uua            a   aaa 
        ucgca                     guaggc cuca   aauguuuguuga uga   a
        |||||                     |||||| ||||   |||||||||||| |||   a
        agugu                     cgucCG GGGU   UUACAGACAACU Acu   u
guaccucu     -------------------cu      C    UAA            -   aag

Annotation confidence Not enough data

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Genome context

chrX: 72776770-72776881 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-421

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature chi-miR-421-3p

Accession	MIMAT0036219
Description	Capra hircus chi-miR-421-3p mature miRNA
Sequence	71 - AUCAACAGACAUUAAUUGGGCGC - 93
Evidence	experimental Illumina [1]

References

PubMed ID: 23981187
Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
"Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
"Reprod Domest Anim (2014) 49:32-40