Stem-loop chi-mir-421

Accession

MI0030787

Description

Capra hircus chi-mir-421 precursor miRNA

Literature search

9 open access papers mention chi-mir-421
(70 sentences)

Sequence

50128 reads, 151.0 reads per million, 36 experiments

guauucgcagugccuaauucggugcacauuguaggcCUCAUUAAAUGUUUGUUGAAUGaaaaaaugaaucAUCAACAGACAUUAAUUGGGCGccugcucugugaucuccaug
....((((((((((......))))).....((((((((((...((((((((((((.(((.........)))))))))))))))...)))).))))))..)))))........

Structure

----guau     gugccuaauucggugcacauu      -    UUA            A   aaa 
        ucgca                     guaggc CUCA   AAUGUUUGUUGA UGa   a
        |||||                     |||||| ||||   |||||||||||| |||   a
        agugu                     cguccG GGGU   UUACAGACAACU Acu   u
guaccucu     -------------------cu      C    UAA            -   aag 

Annotation confidence Medium

Genome context

chrX: 72776770-72776881 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-421

Mature chi-miR-421-5p

• Accession: MIMAT0058971
• Description: Capra hircus chi-miR-421-5p mature miRNA
• Sequence: 37 - CUCAUUAAAUGUUUGUUGAAUG - 58
• Evidence: experimental ; Illumina [1]

Mature chi-miR-421-3p

• Accession: MIMAT0036219
• Description: Capra hircus chi-miR-421-3p mature miRNA
• Sequence: 71 - AUCAACAGACAUUAAUUGGGCG - 92
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40