Stem-loop chi-mir-423

Accession

MI0030788

Description

Capra hircus chi-mir-423 precursor miRNA

Literature search

2 open access papers mention chi-mir-423
(4 sentences)

Sequence

acuugugaggaaauaaaggaaguuaggcUGAGGGGCAGAGAGCGAGACUUUucuauuuuccaaaAGCUCGGUCUGAGGCCCCUCAGUcuugcuuccuaccccgcgcuugaguuucucccc
(((((((.((......(((((((.((((((((((((..(((.((((.(((((.........))))))))).)))...)))))))))))).)))))))...)).)))..))))........

Structure

--------    --   a  aaauaa       u            -AG   G    A     cua 
        acuu  gug gg      aggaagu aggcUGAGGGGC   AGA CGAG CUUUu   u
        ||||  ||| ||      ||||||| ||||||||||||   ||| |||| |||||   u
        ugag  cgc cc      uccuucg ucUGACUCCCCG   UCU GCUC GAaaa   u
ccccucuu    uu   g  ---cca       u            GAG   G    -     ccu 

Annotation confidence Low

Genome context

chr19: 21574266-21574385 [+]

Mature chi-miR-423-5p

• Accession: MIMAT0036220
• Description: Capra hircus chi-miR-423-5p mature miRNA
• Sequence: 29 - UGAGGGGCAGAGAGCGAGACUUU - 51
• Evidence: experimental ; Illumina [1]

Mature chi-miR-423-3p

• Accession: MIMAT0036221
• Description: Capra hircus chi-miR-423-3p mature miRNA
• Sequence: 65 - AGCUCGGUCUGAGGCCCCUCAGU - 87
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40