Stem-loop chi-mir-450

Accession

MI0030797

Description

Capra hircus chi-mir-450 precursor miRNA

Literature search

3 open access papers mention chi-mir-450
(3 sentences)

Sequence

35882 reads, 118.0 reads per million, 36 experiments

caaagaaagaugcuaaacuauUUUUGCGAUGUGUUCCUAAUAUguaaucuaaauguAUUGGGAACAUUUUGCAUUCAUaguuuuguaucaaua
........(((((.(((((((...(((((.(((((((((((((((.......))))))))))))))).)))))...))))))).)))))....

Structure

caaagaaa     u       UUU     U               aa 
        gaugc aaacuau   UGCGA GUGUUCCUAAUAUgu  u
        ||||| |||||||   ||||| |||||||||||||||  c
        cuaug uuugaUA   ACGUU UACAAGGGUUAugua  u
----auaa     u       CUU     U               aa 

Annotation confidence High

Genome context

chrX: 40339836-40339928 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-450

Mature chi-miR-450-5p

• Accession: MIMAT0036235
• Description: Capra hircus chi-miR-450-5p mature miRNA
• Sequence: 22 - UUUUGCGAUGUGUUCCUAAUAU - 43
• Evidence: experimental ; Illumina [1]

Mature chi-miR-450-3p

• Accession: MIMAT0036236
• Description: Capra hircus chi-miR-450-3p mature miRNA
• Sequence: 57 - AUUGGGAACAUUUUGCAUUCAU - 78
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40