Stem-loop chi-mir-454

Accession

MI0030799

Description

Capra hircus chi-mir-454 precursor miRNA

Literature search

10 open access papers mention chi-mir-454
(21 sentences)

Sequence

7770 reads, 24.0 reads per million, 36 experiments

cuguuuauuaccagauccuagaACCCUAUCGAUAUUGUCUCUGCUGuguaaauagcucugagUAGUGCAAUAUUGCUUAUAGGGUUuugguguuugggaagaacaaugggcagg
(((((((((.((((((.((((((((((((((((((((((((.(((((....)))))...)))....)))))))))...)))))))))))).)))))).......))))))))).

Structure

-         ------a      c            ---         ----   --U     g 
 cuguuuauu       ccagau cuagaACCCUAU   CGAUAUUGU    CUC   GCUGu u
 |||||||||       |||||| ||||||||||||   |||||||||    |||   |||||  
 gacggguaa       gguuug gguuUUGGGAUA   GUUAUAACG    gag   cgaua a
g         caagaag      u            UUC         UGAU   ucu     a 

Annotation confidence High

Genome context

chr19: 10138115-10138228 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-454

Mature chi-miR-454-5p

• Accession: MIMAT0036239
• Description: Capra hircus chi-miR-454-5p mature miRNA
• Sequence: 23 - ACCCUAUCGAUAUUGUCUCUGCUG - 46
• Evidence: experimental ; Illumina [1]

Mature chi-miR-454-3p

• Accession: MIMAT0036240
• Description: Capra hircus chi-miR-454-3p mature miRNA
• Sequence: 63 - UAGUGCAAUAUUGCUUAUAGGGUU - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40