Stem-loop chi-mir-497

Accession

MI0030811

Description

Capra hircus chi-mir-497 precursor miRNA

Sequence

ccaccccaguccugcucccgccccAGCAGCACACUGUGGUUUGUACggcacuguggccacgUCCAAACCACACUGUGAUGUUagagcgagggugggggaggcgccgcugaggc
...((.(((((((.(((((((((..((((((((((((((((((.(((((......)))..)).)))))))))..))).))))...))..))))))))))))....)))).)).

Structure

cca  c    ----   g         cA  ---    -   --         U  --   ac 
   cc cagu    ccu cucccgccc  GC   AGCA CAC  UGUGGUUUG AC  ggc  u
   || ||||    ||| |||||||||  ||   |||| |||  ||||||||| ||  |||   
   gg gucg    gga ggggguggg  cg   UUGU GUG  ACACCAAAC Ug  ccg  g
--c  a    ccgc   -         ag  aga    A   UC         C  ca   gu 

Annotation confidence Not enough data

Genome context

chr19: 27448017-27448129 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-497

Mature chi-miR-497-5p

• Accession: MIMAT0036259
• Description: Capra hircus chi-miR-497-5p mature miRNA
• Sequence: 25 - AGCAGCACACUGUGGUUUGUAC - 46
• Evidence: experimental ; Illumina [1]

Mature chi-miR-497-3p

• Accession: MIMAT0036260
• Description: Capra hircus chi-miR-497-3p mature miRNA
• Sequence: 62 - UCCAAACCACACUGUGAUGUU - 82
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40