Stem-loop chi-mir-532

Accession

MI0030818

Description

Capra hircus chi-mir-532 precursor miRNA

Literature search

14 open access papers mention chi-mir-532
(41 sentences)

Sequence

92078 reads, 298.0 reads per million, 36 experiments

gacuugcuuucucucuuaCAUGCCUUGAGUGUAGGACCGUUGGcaucuuaauuacCCUCCCACACCCAAGGCUUGCAggagggccagccuuuuccucccuc
.....(((..(((((((.((.((((((.((((.(((..((.............))..))).)))).)))))).)).)))))))..))).............

Structure

--------gacuu   uu       a  U      A    A   CC  UGGca 
             gcu  cucucuu CA GCCUUG GUGU GGA  GU     u
             |||  ||||||| || |||||| |||| |||  ||     c
             cga  gggaggA GU CGGAAC CACA CCU  ca     u
cucccuccuuuuc   cc       C  U      C    C   CC  uuaau 

Annotation confidence High

Genome context

chrX: 82620208-82620308 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from chi-mir-532

Mature chi-miR-532-5p

• Accession: MIMAT0036270
• Description: Capra hircus chi-miR-532-5p mature miRNA
• Sequence: 19 - CAUGCCUUGAGUGUAGGACCGUUGG - 43
• Evidence: experimental ; Illumina [1]

Mature chi-miR-532-3p

• Accession: MIMAT0036271
• Description: Capra hircus chi-miR-532-3p mature miRNA
• Sequence: 56 - CCUCCCACACCCAAGGCUUGCA - 77
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40