Stem-loop chi-mir-542

Accession

MI0030819

Description

Capra hircus chi-mir-542 precursor miRNA

Literature search

15 open access papers mention chi-mir-542
(83 sentences)

Sequence

33650 reads, 111.0 reads per million, 36 experiments

gucaaggaugcacagaccucagacaucUCGGGGAUCAUCAUGUCACGAGAUaccacugugcacuUGUGACAGAUUGAUAACUGAAAggucugggagccgcucaucuuca
....((((((..(.(..(((((((...((((..((((...(((((((((.(((....)))..)))))))))...))))..))))...)))))))..).)..))))))..

Structure

guca      ca a ac       auc    GG    UCA         -A   c 
    aggaug  c g  cucagac   UCGG  AUCA   UGUCACGAG  Uac a
    ||||||  | |  |||||||   ||||  ||||   |||||||||  |||  
    uucuac  g c  gggucug   AGUC  UAGU   ACAGUGUuc  gug c
--ac      uc c ga       gAA    AA    UAG         ac   u 

Annotation confidence High

Genome context

chrX: 40340880-40340988 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from chi-mir-542

Mature chi-miR-542-5p

• Accession: MIMAT0036272
• Description: Capra hircus chi-miR-542-5p mature miRNA
• Sequence: 28 - UCGGGGAUCAUCAUGUCACGAGAU - 51
• Evidence: experimental ; Illumina [1]

Mature chi-miR-542-3p

• Accession: MIMAT0036273
• Description: Capra hircus chi-miR-542-3p mature miRNA
• Sequence: 65 - UGUGACAGAUUGAUAACUGAAA - 86
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40