Stem-loop chi-mir-543

Accession

MI0030820

Description

Capra hircus chi-mir-543 precursor miRNA

Literature search

8 open access papers mention chi-mir-543
(25 sentences)

Sequence

4720 reads, 15.0 reads per million, 36 experiments

gcugagcugccgaaugauccugaccuguggugcuuaaggagAAGUUGCCCGUGUCUUUUUCGcuuuauaugugacgAAACAUUCGCGGUGCACUUCUUUuucaguauccaauucagccucgaa
((......)).....((..((((..((.((((((.((((((((((.(((((((....((((((.........).)))))....))))).)))))))))))).))))))))..))))..))...

Structure

gcugagcugccgaau  uc    cc  u      u          U  -     UCUU     - uuu 
               ga  cuga  ug ggugcu aaggagAAGU GC CCGUG    UUUCG c   a
               ||  ||||  || |||||| |||||||||| || |||||    ||||| |   u
               cu  gacu  ac cuauga uuUUUCUUCA CG GGCGC    AAAgc g   a
------------aag  cc    ua  -      c          -  U     UUAC     a ugu 

Annotation confidence High

Genome context

chr21: 67110457-67110579 [+]

Clustered miRNAs

17 other miRNAs are < 10 kb from chi-mir-543

Mature chi-miR-543-5p

• Accession: MIMAT0036274
• Description: Capra hircus chi-miR-543-5p mature miRNA
• Sequence: 42 - AAGUUGCCCGUGUCUUUUUCG - 62
• Evidence: experimental ; Illumina [1]

Mature chi-miR-543-3p

• Accession: MIMAT0036275
• Description: Capra hircus chi-miR-543-3p mature miRNA
• Sequence: 77 - AAACAUUCGCGGUGCACUUCUUU - 99
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40