Stem-loop chi-mir-671

Accession

MI0030830

Description

Capra hircus chi-mir-671 precursor miRNA

Literature search

10 open access papers mention chi-mir-671
(64 sentences)

Sequence

4389 reads, 14.0 reads per million, 36 experiments

gccgccgaccuggcaggccaggaagaggAGGAAGCCCUGGAGGGGCUGGAGgugauggauguuuuccUCCGGUUCUCAGGGCUCCACCUuuuccgggccguggagccagggcuggugcaga
((.((((.((((((.((((.((((((((.(((.((((((..(((((((((((.((.......)).)))))))))))))))))))).)))))))).)))).....))))))..))))))...

Structure

---  c    -a      ----a    a        A   A      GA           u  ug 
   gc gccg  ccuggc     ggcc ggaagagg GGA GCCCUG  GGGGCUGGAGg ga  g
   || ||||  ||||||     |||| |||||||| ||| ||||||  ||||||||||| ||  a
   cg uggu  ggaccg     ccgg ccuuuUCC CCU CGGGAC  UCUUGGCCUcc uu  u
aga  -    cg      aggug    g        A   -      --           u  ug 

Annotation confidence High

Genome context

chr4: 116586507-116586627 [+]

Mature chi-miR-671-5p

• Accession: MIMAT0036286
• Description: Capra hircus chi-miR-671-5p mature miRNA
• Sequence: 29 - AGGAAGCCCUGGAGGGGCUGGAG - 51
• Evidence: experimental ; Illumina [1]

Mature chi-miR-671-3p

• Accession: MIMAT0036287
• Description: Capra hircus chi-miR-671-3p mature miRNA
• Sequence: 68 - UCCGGUUCUCAGGGCUCCACCU - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23981187
   Identification of conservative microRNAs in Saanen dairy goat testis through deep sequencing
   "Wu J, Zhu H, Song W, Li M, Liu C, Li N, Tang F, Mu H, Liao M, Li X, Guan W, Li X, Hua J"
   "Reprod Domest Anim (2014) 49:32-40