miRBase entry: tch-mir-200c

Stem-loop tch-mir-200c

Accession

MI0031132

Description

Tupaia chinensis tch-mir-200c precursor miRNA

Sequence

cgucuuacccagcaguguuuggguguugcuuggcauucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((((((....)))))))...)))))))).)))))).))))..

Structure

--    -      a        --u       g 
  cguc uuaccc gcaguguu   ggguguu c
  |||| |||||| ||||||||   |||||||  
  GUAG AAUGGG CGUCAUAA   cuuacgg u
AG    U      C        Ucu       u

Annotation confidence Not enough data

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Genome context

KB369804.1: 350362-350424 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tch-mir-200c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tch-miR-200c-3p

Accession	MIMAT0036473
Description	Tupaia chinensis tch-miR-200c-3p mature miRNA
Sequence	41 - UAAUACUGCCGGGUAAUGAUGGA - 63
Evidence	experimental Illumina [1]

References

PubMed ID: 24314655
microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
"Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
"Virology (2014) 448:247-254