Stem-loop tch-mir-200c

Accession

MI0031132

Description

Tupaia chinensis tch-mir-200c precursor miRNA

Sequence

256865 reads, 781.0 reads per million, 30 experiments

cGUCUUACCCAGCAGUGUUUGGGUGuugcuuggcauucucUAAUACUGCCGGGUAAUGAUGGA
((((((((((.((((((((.(((((((....)))))))...)))))))).)))))).))))..

Structure

--    -      A        --U       g 
  cGUC UUACCC GCAGUGUU   GGGUGuu c
  |||| |||||| ||||||||   |||||||  
  GUAG AAUGGG CGUCAUAA   cuuacgg u
AG    U      C        Ucu       u 

Annotation confidence High

Genome context

KB369804.1: 350362-350424 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tch-mir-200c

Mature tch-miR-200c-5p

• Accession: MIMAT0058999
• Description: Tupaia chinensis tch-miR-200c-5p mature miRNA
• Sequence: 2 - GUCUUACCCAGCAGUGUUUGGGUG - 25
• Evidence: experimental ; Illumina [1]

Mature tch-miR-200c-3p

• Accession: MIMAT0036473
• Description: Tupaia chinensis tch-miR-200c-3p mature miRNA
• Sequence: 41 - UAAUACUGCCGGGUAAUGAUGGA - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24314655
   microRNA expression in hepatitis B virus infected primary treeshrew hepatocytes and the independence of intracellular miR-122 level for de novo HBV infection in culture
   "Xu G, Gao Z, He W, Ma Y, Feng X, Cai T, Lu F, Liu L, Li W"
   "Virology (2014) 448:247-254