Stem-loop ata-MIR156c

Accession

MI0031662

Description

Aegilops tauschii ata-MIR156c precursor miRNA

Gene family

MIPF0000008; MIR156

Literature search

1 open access papers mention ata-MIR156c
(38 sentences)

Sequence

gcgcgcgcggUGACAGAAGAGAGUGAGCACacggccgggcgggacggcacccgccggauggugccgucacggccgcguGCUCACUGCUCUAUCUGUCACCagcugcuucu
(((.((..((((((((((((((((((((((.((((((.....(((((((((........))))))))).)))))).))))))))).)))).))))))))).)))))....

Structure

----   c  gc         -    -         a      ggcgg         cgc 
    gcg gc  ggUGACAGA AGAG AGUGAGCAC cggccg     gacggcacc   c
    ||| ||  ||||||||| |||| ||||||||| ||||||     |||||||||    
    cgu cg  CCACUGUCU UCUC UCACUCGug gccggc     cugccgugg   g
ucuu   -  -a         A    G         c      ----a         uag 

Annotation confidence Not enough data

Genome context

chr2: 375901341-375901450 [-]

Mature ata-miR156c-5p

• Accession: MIMAT0037118
• Description: Aegilops tauschii ata-miR156c-5p mature miRNA
• Sequence: 11 - UGACAGAAGAGAGUGAGCAC - 30
• Evidence: experimental ; Illumina [1]

Mature ata-miR156c-3p

• Accession: MIMAT0037119
• Description: Aegilops tauschii ata-miR156c-3p mature miRNA
• Sequence: 79 - GCUCACUGCUCUAUCUGUCACC - 100
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 23535592
   Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
   "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
   "Nature (2013) 496:91-95