miRBase entry: ata-MIR156a

Stem-loop ata-MIR156a


Accession
MI0031664
Description
Aegilops tauschii ata-MIR156a precursor miRNA

Literature search
1 open access papers mention ata-MIR156a
(38 sentences)

Sequence

uuuggaggucUGACAGAAGAGAGUGAGCACacgcggugguuuccuagcaugcgagcgccaugcugggagcugcgcguGCUCACCCUCUCUCUGUCAGCcauucaccau
..((((((.((((((((((((.((((((((.((((((....(((((((((((....).)))))))))))))))).)))))))).)))).)))))))))).))))....

Structure
--uu    -  u        -    A        a      gguu          - g 
    ugga gg cUGACAGA AGAG GUGAGCAC cgcggu    uccuagcaug c a
    |||| || |||||||| |||| |||||||| ||||||    |||||||||| |  
    acuu cC GACUGUCU UCUC CACUCGug gcgucg    agggucguac g g
uacc    a  -        C    C        c      ----          c c 


Annotation confidence Not enough data
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Genome context
chr3: 66945233-66945340 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ata-MIR156a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ata-miR156a-5p

Accession MIMAT0037122
Description Aegilops tauschii ata-miR156a-5p mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence experimental
Illumina [1]

Mature ata-miR156a-3p

Accession MIMAT0037123
Description Aegilops tauschii ata-miR156a-3p mature miRNA
Sequence 78 - GCUCACCCUCUCUCUGUCAGC - 98
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95