miRBase entry: ata-MIR156b

Stem-loop ata-MIR156b


Accession
MI0031669
Description
Aegilops tauschii ata-MIR156b precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
1 open access papers mention ata-MIR156b
(38 sentences)

Sequence

agguggaggcUGACAGAAGAGAGUGAGCACacauggugccuuucuugcauggugaauuaaugggagaaguucaugcuugaagcuauguguGCUCAUUUCUCUCUCUGUCAGCcauuauaacu
..((((.((((((((((((((((((((((((((((((....(((..((((((..................))))))..))))))))))))))))).)))))).)))))))))).))))....

Structure
--ag    a          -      -              gccu   uu      ugaauuaa 
    gugg ggcUGACAGA AGAGAG UGAGCACacauggu    uuc  gcaugg        u
    |||| |||||||||| |||||| ||||||||||||||    |||  ||||||         
    uauu cCGACUGUCU UCUCUU ACUCGuguguaucg    aag  cguacu        g
ucaa    a          C      U              ----   uu      ugaagagg 


Annotation confidence Not enough data
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Genome context
chr3: 66945650-66945771 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from ata-MIR156b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ata-miR156b-5p

Accession MIMAT0037132
Description Aegilops tauschii ata-miR156b-5p mature miRNA
Sequence 11 - UGACAGAAGAGAGUGAGCAC - 30
Evidence experimental
Illumina [1]

Mature ata-miR156b-3p

Accession MIMAT0037133
Description Aegilops tauschii ata-miR156b-3p mature miRNA
Sequence 91 - GCUCAUUUCUCUCUCUGUCAGC - 112
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 23535592
    Aegilops tauschii draft genome sequence reveals a gene repertoire for wheat adaptation
    "Jia J, Zhao S, Kong X, Li Y, Zhao G, He W, Appels R, Pfeifer M, Tao Y, Zhang X, Jing R, Zhang C, Ma Y, Gao L, Gao C, Spannagl M, Mayer KF, Li D, Pan S, Zheng F, Hu Q, Xia X, Li J, Liang Q, Chen J, Wicker T, Gou C, Kuang H, He G, Luo Y, Keller B, Xia Q, Lu"
    "Nature (2013) 496:91-95