miRBase entry: hpo-mir-100

Stem-loop hpo-mir-100

Accession

MI0032667

Description

Heligmosomoides polygyrus hpo-mir-100 precursor miRNA

Literature search

1 open access papers mention hpo-mir-100
(5 sentences)

Sequence

AACCCGUAGAUCCGAACUUGUGUucaucauugugcuacACAGGCUCGGCUACUGGUAGA
.(((.((((..((((.(((((((.(((....)))..))))))).)))))))).)))...

Structure

--A   C    AU    A       -u   c 
   ACC GUAG  CCGA CUUGUGU  cau a
   ||| ||||  |||| |||||||  |||  
   UGG CAUC  GGCU GGACAca  gug u
AGA   U    --    C       uc   u

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_232277: 709-767 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-100

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-100-5p

Accession	MIMAT0040420
Description	Heligmosomoides polygyrus hpo-miR-100-5p mature miRNA
Sequence	1 - AACCCGUAGAUCCGAACUUGUGU - 23
Evidence	experimental Illumina [1]

Mature hpo-miR-100-3p

Accession	MIMAT0040421
Description	Heligmosomoides polygyrus hpo-miR-100-3p mature miRNA
Sequence	39 - ACAGGCUCGGCUACUGGUAGA - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488