miRBase entry: hpo-mir-5899a

Stem-loop hpo-mir-5899a

Accession

MI0032673

Description

Heligmosomoides polygyrus hpo-mir-5899a precursor miRNA

Sequence

CAGGCUAUGCAUUCCGUGUGcauuuucaaugacugUACCCGUAAUGUACAUAGCUUGAG
(((((((((((((.((.(((((.((.....)).))))).)).))))..)))))))))..

Structure

--         --    C  U     u  u 
  CAGGCUAUG  CAUU CG GUGca uu c
  |||||||||  |||| || ||||| || a
  GUUCGAUAC  GUAA GC CAUgu ag a
GA         AU    U  C     c  u

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_222843: 5908-5966 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-5899a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-5899a-5p

Accession	MIMAT0040432
Description	Heligmosomoides polygyrus hpo-miR-5899a-5p mature miRNA
Sequence	1 - CAGGCUAUGCAUUCCGUGUG - 20
Evidence	experimental Illumina [1]

Mature hpo-miR-5899a-3p

Accession	MIMAT0040433
Description	Heligmosomoides polygyrus hpo-miR-5899a-3p mature miRNA
Sequence	36 - UACCCGUAAUGUACAUAGCUUGAG - 59
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488