miRBase entry: hpo-mir-55

Stem-loop hpo-mir-55

Accession

MI0032682

Description

Heligmosomoides polygyrus hpo-mir-55 precursor miRNA

Sequence

CGGUGGAAAUUGUUCGGUUGUGccucguuugccaUACCCGUAUGAGUUUCCGCUGAG
(((((((((((...(((.((((.(......).)))).)))....)))))))))))..

Structure

--           -GUU   U    c uc 
  CGGUGGAAAUU    CGG UGUG c  g
  |||||||||||    ||| |||| |   
  GUCGCCUUUGA    GCC AUac g  u
GA           GUAU   C    c uu

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

HpolyGenome23022012_contig_144429: 102-158 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-55

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-55-5p

Accession	MIMAT0040450
Description	Heligmosomoides polygyrus hpo-miR-55-5p mature miRNA
Sequence	1 - CGGUGGAAAUUGUUCGGUUGUG - 22
Evidence	experimental Illumina [1]

Mature hpo-miR-55-3p

Accession	MIMAT0040451
Description	Heligmosomoides polygyrus hpo-miR-55-3p mature miRNA
Sequence	35 - UACCCGUAUGAGUUUCCGCUGAG - 57
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488