miRBase entry: hpo-mir-250

Stem-loop hpo-mir-250

Accession

MI0032701

Description

Heligmosomoides polygyrus hpo-mir-250 precursor miRNA

Sequence

CCGGCAGUUGCCUCGUGAUCCGugaucaguagaUCGAAUCACAGCCAACUGCUGCU
.(((((((((.((.(((((...(((((....))))).))))))).)))))))))..

Structure

-C         C  C     CCG     a 
  CGGCAGUUG CU GUGAU   ugauc g
  ||||||||| || |||||   |||||  
  GUCGUCAAC GA CACUA   GCUag u
UC         C  -     --A     a

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_43338: 3014-3069 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-250

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-250-5p

Accession	MIMAT0040488
Description	Heligmosomoides polygyrus hpo-miR-250-5p mature miRNA
Sequence	1 - CCGGCAGUUGCCUCGUGAUCCG - 22
Evidence	experimental Illumina [1]

Mature hpo-miR-250-3p

Accession	MIMAT0040489
Description	Heligmosomoides polygyrus hpo-miR-250-3p mature miRNA
Sequence	34 - UCGAAUCACAGCCAACUGCUGCU - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488