miRBase entry: hpo-mir-5983

Stem-loop hpo-mir-5983

Accession

MI0032737

Description

Heligmosomoides polygyrus hpo-mir-5983 precursor miRNA

Sequence

GAGUCUAUCGUGUCUCAAAGCgcgcucucagaugcUUUGGCACAUGUUAGGCCGGC
(.(((((.(((((.(((((((((.......).)))))))).))))).))))))...

Structure

--- A     U     C        - gc 
   G GUCUA CGUGU UCAAAGCg c  u
   | ||||| ||||| |||||||| |  c
   C CGGAU GUACA GGUUUcgu g  u
CGG -     U     C        a ac

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

HpolyGenome23022012_contig_43338: 3155-3210 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from hpo-mir-5983

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-5983-5p

Accession	MIMAT0040560
Description	Heligmosomoides polygyrus hpo-miR-5983-5p mature miRNA
Sequence	1 - GAGUCUAUCGUGUCUCAAAGC - 21
Evidence	experimental Illumina [1]

Mature hpo-miR-5983-3p

Accession	MIMAT0040561
Description	Heligmosomoides polygyrus hpo-miR-5983-3p mature miRNA
Sequence	36 - UUUGGCACAUGUUAGGCCGGC - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488