Stem-loop hpo-mir-10040

Accession

MI0032759

Description

Heligmosomoides polygyrus hpo-mir-10040 precursor miRNA

Sequence

UGAAAGACAGCGACGAAGAAGAGcaaggaugcgacccUUCUGCGUCACCGUCCUUCAGC
((((.(((.(.((((.(((((.(((....)))....))))).)))).).))).))))..

Structure

--    A   A C    A     ---A   a 
  UGAA GAC G GACG AGAAG    Gca g
  |||| ||| | |||| |||||    |||  
  ACUU CUG C CUGC UCUUc    cgu g
CG    C   C A    G     ccag   a 

Annotation confidence Not enough data

Genome context

HpolyGenome23022012_contig_108799: 1044-1102 [-]

Mature hpo-miR-10040-5p

• Accession: MIMAT0040602
• Description: Heligmosomoides polygyrus hpo-miR-10040-5p mature miRNA
• Sequence: 1 - UGAAAGACAGCGACGAAGAAGAG - 23
• Evidence: experimental ; Illumina [1]

Mature hpo-miR-10040-3p

• Accession: MIMAT0040603
• Description: Heligmosomoides polygyrus hpo-miR-10040-3p mature miRNA
• Sequence: 38 - UUCUGCGUCACCGUCCUUCAGC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25421927
   Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
   Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
   Nat Commun (2014) 5:5488