miRBase entry: hpo-mir-10156b

Stem-loop hpo-mir-10156b

Accession

MI0032908

Description

Heligmosomoides polygyrus hpo-mir-10156b precursor miRNA

Sequence

uagcaaugacGCUCCUUUGUGCUAUUGUUAUGcacaaaugacacaACAAUAGCACAAAGGAGCGUCAcugccacaau
..(((.(((((((((((((((((((((((.((((....)).)).))))))))))))))))))))))).)))......

Structure

----ua   a                       A  -  c 
      gca ugacGCUCCUUUGUGCUAUUGUU UG ca a
      ||| ||||||||||||||||||||||| || ||  
      cgu ACUGCGAGGAAACACGAUAACAa ac gu a
uaacac   c                       c  a  a

Annotation confidence Not enough data

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Genome context

HpolyGenome23022012_contig_72958: 1281-1357 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from hpo-mir-10156b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature hpo-miR-10156b-5p

Accession	MIMAT0040898
Description	Heligmosomoides polygyrus hpo-miR-10156b-5p mature miRNA
Sequence	11 - GCUCCUUUGUGCUAUUGUUAUG - 32
Evidence	experimental Illumina [1]

Mature hpo-miR-10156b-3p

Accession	MIMAT0040899
Description	Heligmosomoides polygyrus hpo-miR-10156b-3p mature miRNA
Sequence	46 - ACAAUAGCACAAAGGAGCGUCA - 67
Evidence	experimental Illumina [1]

References

PubMed ID: 25421927
Exosomes secreted by nematode parasites transfer small RNAs to mammalian cells and modulate innate immunity
Buck AH, Coakley G, Simbari F, McSorley HJ, Quintana JF, Le Bihan T, Kumar S, Abreu-Goodger C, Lear M, Harcus Y, Ceroni A, Babayan SA, Blaxter M, Ivens A, Maizels RM
Nat Commun (2014) 5:5488