Stem-loop gmo-mir-100a

Accession

MI0035995

Description

Gadus morhua gmo-mir-100a precursor miRNA

Sequence

AACCCGUAGAUCCGAACUUGUGgugacucucugcgCAAGUUCAUAUCUAUAGGUAUG
.(((.((((((..(((((((((..((...))..)))))))))..)))))).)))...

Structure

--A   C      CC         gu  c 
   ACC GUAGAU  GAACUUGUG  ga  
   ||| ||||||  |||||||||  || u
   UGG UAUCUA  CUUGAACgc  cu  
GUA   A      UA         gu  c 

Annotation confidence Not enough data

Genome context

HE569363.1: 2591158-2591214 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from gmo-mir-100a

Mature gmo-miR-100a-5p

• Accession: MIMAT0044035
• Description: Gadus morhua gmo-miR-100a-5p mature miRNA
• Sequence: 1 - AACCCGUAGAUCCGAACUUGUG - 22
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-100a-3p

• Accession: MIMAT0044036
• Description: Gadus morhua gmo-miR-100a-3p mature miRNA
• Sequence: 36 - CAAGUUCAUAUCUAUAGGUAUG - 57
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324