miRBase entry: gmo-mir-181a-4

Stem-loop gmo-mir-181a-4

Accession

MI0036032

Description

Gadus morhua gmo-mir-181a-4 precursor miRNA

Literature search

1 open access papers mention gmo-mir-181a-4
(4 sentences)

Sequence

AACAUUCAACGCUGUCGGUGAGUuugugacucagagaaaccaucgggcggagaguguac
.((((((..((((..(((((.((((.(.......).)))))))))))))..))))))..

Structure

-A      AA    GU     A    g ga 
  ACAUUC  CGCU  CGGUG GUuu u  c
  ||||||  ||||  ||||| |||| |  u
  ugugag  gcgg  gcuac caaa a  c
ca      ag    --     -    g ga

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

HE566271.1: 313143-313201 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-181a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-181a-5p

Accession	MIMAT0044090
Description	Gadus morhua gmo-miR-181a-5p mature miRNA
Sequence	1 - AACAUUCAACGCUGUCGGUGAGU - 23
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305