miRBase entry: gmo-mir-23a-3

Stem-loop gmo-mir-23a-3

Accession

MI0036043

Description

Gadus morhua gmo-mir-23a-3 precursor miRNA

Sequence

gggguuccuggcaccgugauuuggugcacaaagagaaacaaaaAUCACAUUGCCAGGGAUUUCCA
(((((((((((((..(((((((.((............))..)))))))..)))))))))))))..

Structure

--             cc       -g  gcaca 
  gggguuccuggca  gugauuu  gu     a
  |||||||||||||  |||||||  ||      
  CUUUAGGGACCGU  CACUAaa  ca     a
AC             UA       aa  aagag

Annotation confidence Not enough data

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Genome context

HE567057.1: 678326-678390 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from gmo-mir-23a-3

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-23a-3p

Accession	MIMAT0044005
Description	Gadus morhua gmo-miR-23a-3p mature miRNA
Sequence	44 - AUCACAUUGCCAGGGAUUUCCA - 65
Evidence	experimental SOLiD [1], Illumina [2]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305