Stem-loop gmo-mir-181a-1

Accession

MI0036065

Description

Gadus morhua gmo-mir-181a-1 precursor miRNA

Literature search

1 open access papers mention gmo-mir-181a-1
(4 sentences)

Sequence

AACAUUCAACGCUGUCGGUGAGUuugggauuaaauuggcacaaaACCAUCGACCGUUGAUUGUAC
.(((.((((((..(((((((..((((..............))))..))))))))))))).)))..

Structure

-A   U      CU       AG    ggauua 
  ACA UCAACG  GUCGGUG  Uuug      a
  ||| ||||||  |||||||  ||||       
  UGU AGUUGC  CAGCUAC  aaac      a
CA   U      --       CA    acgguu 

Annotation confidence Not enough data

Genome context

HE571820.1: 1459829-1459893 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-181a-1

Mature gmo-miR-181a-5p

• Accession: MIMAT0044090
• Description: Gadus morhua gmo-miR-181a-5p mature miRNA
• Sequence: 1 - AACAUUCAACGCUGUCGGUGAGU - 23
• Evidence: experimental ; SOLiD [1]

Mature gmo-miR-181a-3p

• Accession: MIMAT0044133
• Description: Gadus morhua gmo-miR-181a-3p mature miRNA
• Sequence: 45 - ACCAUCGACCGUUGAUUGUAC - 65
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305