miRBase entry: gmo-mir-454

Stem-loop gmo-mir-454

Accession

MI0036181

Description

Gadus morhua gmo-mir-454 precursor miRNA

Sequence

acccuaucaguauugccccugcuguccacugaguucagagUAGUGCAAUAUUGCUUAUAGGGU
((((((((((((((((..(((((.....(((....)))))))).)))))))))...)))))))

Structure

       ---         cc     gucca   a 
acccuau   caguauugc  cugcu     cug g
|||||||   |||||||||  |||||     |||  
UGGGAUA   GUUAUAACG  GAUga     gac u
       UUC         -U     -----   u

Annotation confidence Not enough data

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Genome context

HE568745.1: 78575-78637 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-454

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-454-3p

Accession	MIMAT0044282
Description	Gadus morhua gmo-miR-454-3p mature miRNA
Sequence	41 - UAGUGCAAUAUUGCUUAUAGGGU - 63
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305